IL_5MDV_160

3D structure

PDB id

5MDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

5MDV|1|2|U|1025, 5MDV|1|2|U|1030, 5MDV|1|2|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MDV|1|2|G|1003
5MDV|1|2|A|1004
5MDV|1|2|A|1005
5MDV|1|2|G|1006
*
5MDV|1|2|U|1023
5MDV|1|2|G|1024
5MDV|1|2|U|1025
5MDV|1|2|G|1026
5MDV|1|2|C|1027
5MDV|1|2|C|1028
5MDV|1|2|U|1029
5MDV|1|2|U|1030
5MDV|1|2|C|1031
5MDV|1|2|G|1032
5MDV|1|2|G|1033
5MDV|1|2|G|1034
5MDV|1|2|A|1035
5MDV|1|2|A|1036
5MDV|1|2|C|1037

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain s

30S ribosomal protein S14