IL_5MDW_001
3D structure
- PDB id
- 5MDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MDW_001 not in the Motif Atlas
- Geometric match to IL_5J7L_245
- Geometric discrepancy: 0.0515
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5MDW|1|1|G|24
5MDW|1|1|U|25
5MDW|1|1|G|26
5MDW|1|1|G|27
5MDW|1|1|A|28
5MDW|1|1|U|29
5MDW|1|1|G|30
*
5MDW|1|1|C|510
5MDW|1|1|U|511
5MDW|1|1|G|512
5MDW|1|1|A|513
5MDW|1|1|A|514
5MDW|1|1|A|515
5MDW|1|1|C|516
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
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