IL_5MDW_009

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDW_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2405

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5MDW|1|1|C|274
5MDW|1|1|C|275
5MDW|1|1|U|276
5MDW|1|1|G|277
5MDW|1|1|A|278
5MDW|1|1|A|279
5MDW|1|1|U|280
5MDW|1|1|C|281
*
5MDW|1|1|G|359
5MDW|1|1|U|360
5MDW|1|1|G|361
5MDW|1|1|A|362
5MDW|1|1|G|363

Current chains

Chain 1

23S ribosomal RNA

Nearby chains