IL_5MDW_133

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDW_133 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0847

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5MDW|1|2|U|409
5MDW|1|2|G|410
5MDW|1|2|A|411
5MDW|1|2|A|412
5MDW|1|2|G|413
5MDW|1|2|A|414
5MDW|1|2|A|415
5MDW|1|2|G|416
*
5MDW|1|2|U|427
5MDW|1|2|G|428
5MDW|1|2|U|429
5MDW|1|2|A|430
5MDW|1|2|A|431
5MDW|1|2|A|432
5MDW|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4