IL_5MDW_137

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDW_137 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.0432

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

5MDW|1|2|C|504
5MDW|1|2|G|505
5MDW|1|2|G|506
5MDW|1|2|C|507
5MDW|1|2|U|508
5MDW|1|2|A|509
5MDW|1|2|A|510
5MDW|1|2|C|511
*
5MDW|1|2|G|540
5MDW|1|2|G|541

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 6

Alternative ribosome-rescue factor A

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12