IL_5MDW_160

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDW_160 not in the Motif Atlas

Geometric match to IL_1KFO_002

Geometric discrepancy: 0.1826

The information below is about IL_1KFO_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5MDW|1|2|G|1050
5MDW|1|2|C|1051
5MDW|1|2|U|1052
*
5MDW|1|2|G|1206
5MDW|1|2|2MG|1207
5MDW|1|2|C|1208

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 7

Peptide chain release factor 2

Chain h

30S ribosomal protein S3

Chain s

30S ribosomal protein S14