IL_5MDW_167

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

5MDW|1|2|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDW_167 not in the Motif Atlas

Homologous match to IL_5J7L_053

Geometric discrepancy: 0.1267

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5MDW|1|2|C|1158
5MDW|1|2|U|1159
5MDW|1|2|G|1160
5MDW|1|2|C|1161
*
5MDW|1|2|G|1175
5MDW|1|2|A|1176
5MDW|1|2|G|1177
5MDW|1|2|G|1178
5MDW|1|2|A|1179
5MDW|1|2|A|1180
5MDW|1|2|G|1181

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain n

30S ribosomal protein S9