IL_5MDY_009

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDY_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2424

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5MDY|1|1|C|274
5MDY|1|1|C|275
5MDY|1|1|U|276
5MDY|1|1|G|277
5MDY|1|1|A|278
5MDY|1|1|A|279
5MDY|1|1|U|280
5MDY|1|1|C|281
*
5MDY|1|1|G|359
5MDY|1|1|U|360
5MDY|1|1|G|361
5MDY|1|1|A|362
5MDY|1|1|G|363

Current chains

Chain 1

23S ribosomal RNA

Nearby chains