IL_5MDY_011
3D structure
- PDB id
- 5MDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 5MDY|1|1|A|504, 5MDY|1|1|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MDY_011 not in the Motif Atlas
- Homologous match to IL_5J7L_255
- Geometric discrepancy: 0.0668
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
5MDY|1|1|G|481
5MDY|1|1|A|482
5MDY|1|1|A|483
5MDY|1|1|C|484
*
5MDY|1|1|G|496
5MDY|1|1|A|497
5MDY|1|1|G|498
5MDY|1|1|U|499
5MDY|1|1|G|500
5MDY|1|1|A|501
5MDY|1|1|A|502
5MDY|1|1|A|503
5MDY|1|1|A|504
5MDY|1|1|A|505
5MDY|1|1|G|506
5MDY|1|1|A|507
5MDY|1|1|A|508
5MDY|1|1|C|509
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
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