3D structure

PDB id
5MDY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.35 Å

Loop

Sequence
CGAGG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5MDY_051 not in the Motif Atlas
Homologous match to IL_5J7L_293
Geometric discrepancy: 0.0781
The information below is about IL_5J7L_293
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

5MDY|1|1|C|1357
5MDY|1|1|G|1358
5MDY|1|1|A|1359
5MDY|1|1|G|1360
5MDY|1|1|G|1361
*
5MDY|1|1|C|1370
5MDY|1|1|G|1371
5MDY|1|1|U|1372
5MDY|1|1|A|1373
5MDY|1|1|G|1374

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L2
Chain X
50S ribosomal protein L28
Chain d
50S ribosomal protein L34

Coloring options:


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