IL_5MDY_055

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

5MDY|1|1|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDY_055 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.0875

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5MDY|1|1|C|1417
5MDY|1|1|G|1418
5MDY|1|1|A|1419
5MDY|1|1|A|1420
5MDY|1|1|G|1421
*
5MDY|1|1|C|1577
5MDY|1|1|U|1578
5MDY|1|1|A|1579
5MDY|1|1|A|1580
5MDY|1|1|G|1581

Current chains

Chain 1

23S ribosomal RNA

Nearby chains