IL_5MDY_068

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5MDY|1|1|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDY_068 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0635

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5MDY|1|1|C|1686
5MDY|1|1|G|1687
5MDY|1|1|U|1688
5MDY|1|1|A|1689
5MDY|1|1|A|1690
5MDY|1|1|C|1691
*
5MDY|1|1|G|1696
5MDY|1|1|G|1697
5MDY|1|1|A|1698
5MDY|1|1|G|1699
5MDY|1|1|A|1700
5MDY|1|1|A|1701
5MDY|1|1|G|1702

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2