IL_5MDY_069

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

5MDY|1|1|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDY_069 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1196

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5MDY|1|1|U|1712
5MDY|1|1|A|1713
5MDY|1|1|U|1714
5MDY|1|1|G|1715
5MDY|1|1|U|1716
5MDY|1|1|A|1717
5MDY|1|1|G|1718
*
5MDY|1|1|U|1742
5MDY|1|1|G|1743
5MDY|1|1|A|1744
5MDY|1|1|A|1745
5MDY|1|1|A|1746

Current chains

Chain 1

23S ribosomal RNA

Nearby chains