IL_5MDY_090

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGGAG*CGACCUUGAAAUACC

Length

20 nucleotides

Bulged bases

5MDY|1|1|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MDY|1|1|G|2123
5MDY|1|1|G|2124
5MDY|1|1|G|2125
5MDY|1|1|A|2126
5MDY|1|1|G|2127
*
5MDY|1|1|C|2161
5MDY|1|1|G|2162
5MDY|1|1|A|2163
5MDY|1|1|C|2164
5MDY|1|1|C|2165
5MDY|1|1|U|2166
5MDY|1|1|U|2167
5MDY|1|1|G|2168
5MDY|1|1|A|2169
5MDY|1|1|A|2170
5MDY|1|1|A|2171
5MDY|1|1|U|2172
5MDY|1|1|A|2173
5MDY|1|1|C|2174
5MDY|1|1|C|2175

Current chains

Chain 1

23S ribosomal RNA

Nearby chains