IL_5MDY_091

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5MDY|1|1|U|2131, 5MDY|1|1|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDY_091 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.2917

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5MDY|1|1|C|2129
5MDY|1|1|U|2130
5MDY|1|1|U|2131
5MDY|1|1|U|2132
5MDY|1|1|G|2133
5MDY|1|1|A|2134
5MDY|1|1|A|2135
5MDY|1|1|G|2136
*
5MDY|1|1|U|2155
5MDY|1|1|G|2156
5MDY|1|1|G|2157
5MDY|1|1|A|2158
5MDY|1|1|G|2159

Current chains

Chain 1

23S ribosomal RNA

Nearby chains