IL_5MDY_159

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GAAGUUUU*AGAAUGUGCCUUCGGGAAC

Length

27 nucleotides

Bulged bases

5MDY|1|2|U|1025, 5MDY|1|2|U|1030, 5MDY|1|2|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MDY|1|2|G|1003
5MDY|1|2|A|1004
5MDY|1|2|A|1005
5MDY|1|2|G|1006
5MDY|1|2|U|1007
5MDY|1|2|U|1008
5MDY|1|2|U|1009
5MDY|1|2|U|1010
*
5MDY|1|2|A|1019
5MDY|1|2|G|1020
5MDY|1|2|A|1021
5MDY|1|2|A|1022
5MDY|1|2|U|1023
5MDY|1|2|G|1024
5MDY|1|2|U|1025
5MDY|1|2|G|1026
5MDY|1|2|C|1027
5MDY|1|2|C|1028
5MDY|1|2|U|1029
5MDY|1|2|U|1030
5MDY|1|2|C|1031
5MDY|1|2|G|1032
5MDY|1|2|G|1033
5MDY|1|2|G|1034
5MDY|1|2|A|1035
5MDY|1|2|A|1036
5MDY|1|2|C|1037

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain s

30S ribosomal protein S14