IL_5MDY_186

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

5MDY|1|1|U|846, 5MDY|1|1|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDY_186 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.1224

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

5MDY|1|1|A|844
5MDY|1|1|A|845
5MDY|1|1|U|846
5MDY|1|1|U|847
5MDY|1|1|C|848
*
5MDY|1|1|G|930
5MDY|1|1|U|931
5MDY|1|1|U|932
5MDY|1|1|A|933
5MDY|1|1|U|934

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L30