3D structure

PDB id
5MDY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.35 Å

Loop

Sequence
GAAG*UGUGCCUUCGGGAAC
Length
19 nucleotides
Bulged bases
5MDY|1|2|U|1030, 5MDY|1|2|C|1031, 5MDY|1|2|G|1032
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5MDY|1|2|G|1003
5MDY|1|2|A|1004
5MDY|1|2|A|1005
5MDY|1|2|G|1006
*
5MDY|1|2|U|1023
5MDY|1|2|G|1024
5MDY|1|2|U|1025
5MDY|1|2|G|1026
5MDY|1|2|C|1027
5MDY|1|2|C|1028
5MDY|1|2|U|1029
5MDY|1|2|U|1030
5MDY|1|2|C|1031
5MDY|1|2|G|1032
5MDY|1|2|G|1033
5MDY|1|2|G|1034
5MDY|1|2|A|1035
5MDY|1|2|A|1036
5MDY|1|2|C|1037

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain s
30S ribosomal protein S14

Coloring options:

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