IL_5MDZ_009

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDZ_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2432

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5MDZ|1|1|C|274
5MDZ|1|1|C|275
5MDZ|1|1|U|276
5MDZ|1|1|G|277
5MDZ|1|1|A|278
5MDZ|1|1|A|279
5MDZ|1|1|U|280
5MDZ|1|1|C|281
*
5MDZ|1|1|G|359
5MDZ|1|1|U|360
5MDZ|1|1|G|361
5MDZ|1|1|A|362
5MDZ|1|1|G|363

Current chains

Chain 1

23S ribosomal RNA

Nearby chains