IL_5MDZ_070

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

5MDZ|1|1|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDZ_070 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1164

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5MDZ|1|1|U|1712
5MDZ|1|1|A|1713
5MDZ|1|1|U|1714
5MDZ|1|1|G|1715
5MDZ|1|1|U|1716
5MDZ|1|1|A|1717
5MDZ|1|1|G|1718
*
5MDZ|1|1|U|1742
5MDZ|1|1|G|1743
5MDZ|1|1|A|1744
5MDZ|1|1|A|1745
5MDZ|1|1|A|1746

Current chains

Chain 1

23S ribosomal RNA

Nearby chains