IL_5MDZ_080
3D structure
- PDB id
- 5MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome (empty A site)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 5MDZ|1|1|A|1938, 5MDZ|1|1|U|1944
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MDZ_080 not in the Motif Atlas
- Homologous match to IL_5J7L_319
- Geometric discrepancy: 0.072
- The information below is about IL_5J7L_319
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
5MDZ|1|1|C|1934
5MDZ|1|1|G|1935
5MDZ|1|1|A|1936
5MDZ|1|1|A|1937
5MDZ|1|1|A|1938
5MDZ|1|1|5MU|1939
5MDZ|1|1|U|1940
5MDZ|1|1|C|1941
5MDZ|1|1|C|1942
5MDZ|1|1|U|1943
5MDZ|1|1|U|1944
5MDZ|1|1|G|1945
*
5MDZ|1|1|C|1961
5MDZ|1|1|5MC|1962
5MDZ|1|1|U|1963
5MDZ|1|1|G|1964
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- 50S ribosomal protein L2
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