IL_5MDZ_146

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDZ_146 not in the Motif Atlas

Geometric match to IL_5J7L_031

Geometric discrepancy: 0.0703

The information below is about IL_5J7L_031

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

5MDZ|1|2|G|654
5MDZ|1|2|A|655
*
5MDZ|1|2|U|751
5MDZ|1|2|G|752
5MDZ|1|2|A|753
5MDZ|1|2|C|754

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S8

Chain t

30S ribosomal protein S15