IL_5MDZ_176
3D structure
- PDB id
- 5MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome (empty A site)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GU(5MC)AC*GAAGUC
- Length
- 11 nucleotides
- Bulged bases
- 5MDZ|1|2|A|1493
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MDZ_176 not in the Motif Atlas
- Homologous match to IL_6CZR_167
- Geometric discrepancy: 0.5021
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
5MDZ|1|2|G|1405
5MDZ|1|2|U|1406
5MDZ|1|2|5MC|1407
5MDZ|1|2|A|1408
5MDZ|1|2|C|1409
*
5MDZ|1|2|G|1491
5MDZ|1|2|A|1492
5MDZ|1|2|A|1493
5MDZ|1|2|G|1494
5MDZ|1|2|U|1495
5MDZ|1|2|C|1496
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 4
- mRNA
- Chain 5
- Transfer RNA; tRNA
- Chain q
- 30S ribosomal protein S12
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