IL_5ME0_039

3D structure

PDB id

5ME0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S Pre-Initiation Complex 1 (30S IC-1) Stalled by GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

5ME0|1|A|G|926

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ME0_039 not in the Motif Atlas

Homologous match to IL_6CZR_148

Geometric discrepancy: 0.5041

The information below is about IL_6CZR_148

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

5ME0|1|A|G|925
5ME0|1|A|G|926
5ME0|1|A|G|927
*
5ME0|1|A|U|1390
5ME0|1|A|U|1391

Current chains

Chain A

16S ribosomal RNA

Nearby chains