IL_5MGP_041

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAG*CAC

Length

36 nucleotides

Bulged bases

5MGP|1|A|U|1061, 5MGP|1|A|G|1062, 5MGP|1|A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MGP|1|A|G|1055
5MGP|1|A|G|1056
5MGP|1|A|A|1057
5MGP|1|A|U|1058
5MGP|1|A|G|1059
5MGP|1|A|U|1060
5MGP|1|A|U|1061
5MGP|1|A|G|1062
5MGP|1|A|G|1063
5MGP|1|A|C|1064
5MGP|1|A|U|1065
5MGP|1|A|U|1066
5MGP|1|A|A|1067
5MGP|1|A|G|1068
5MGP|1|A|A|1069
5MGP|1|A|A|1070
5MGP|1|A|G|1071
5MGP|1|A|C|1072
5MGP|1|A|A|1073
5MGP|1|A|G|1074
5MGP|1|A|C|1075
5MGP|1|A|C|1076
5MGP|1|A|A|1077
5MGP|1|A|U|1078
5MGP|1|A|C|1079
5MGP|1|A|A|1080
5MGP|1|A|U|1081
5MGP|1|A|U|1082
5MGP|1|A|U|1083
5MGP|1|A|A|1084
5MGP|1|A|A|1085
5MGP|1|A|A|1086
5MGP|1|A|G|1087
*
5MGP|1|A|C|1102
5MGP|1|A|A|1103
5MGP|1|A|C|1104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain M

50S ribosomal protein L16

Chain z

Peptide chain release factor 2