IL_5MGP_051

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MGP_051 not in the Motif Atlas

Homologous match to IL_5J7L_294

Geometric discrepancy: 0.3224

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

5MGP|1|A|U|1415
5MGP|1|A|G|1416
*
5MGP|1|A|C|1582
5MGP|1|A|A|1583
5MGP|1|A|U|1584
5MGP|1|A|C|1585
5MGP|1|A|A|1586
5MGP|1|A|G|1587

Current chains

Chain A

23S ribosomal RNA

Nearby chains