IL_5MGP_059

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

5MGP|1|A|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MGP_059 not in the Motif Atlas

Homologous match to IL_5J7L_302

Geometric discrepancy: 0.2693

The information below is about IL_5J7L_302

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5MGP|1|A|C|1489
5MGP|1|A|A|1490
5MGP|1|A|G|1491
*
5MGP|1|A|C|1499
5MGP|1|A|G|1500

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2