IL_5MGP_089

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MGP_089 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1312

The information below is about IL_5J7L_338

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5MGP|1|A|C|2466
5MGP|1|A|C|2467
5MGP|1|A|A|2468
5MGP|1|A|A|2469
5MGP|1|A|G|2470
*
5MGP|1|A|C|2480
5MGP|1|A|G|2481
5MGP|1|A|A|2482
5MGP|1|A|C|2483
5MGP|1|A|G|2484

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain M

50S ribosomal protein L16

Chain z

Peptide chain release factor 2