IL_5MGP_128

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MGP_128 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1019

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5MGP|1|a|U|409
5MGP|1|a|G|410
5MGP|1|a|A|411
5MGP|1|a|A|412
5MGP|1|a|G|413
5MGP|1|a|A|414
5MGP|1|a|A|415
5MGP|1|a|G|416
*
5MGP|1|a|U|427
5MGP|1|a|G|428
5MGP|1|a|U|429
5MGP|1|a|A|430
5MGP|1|a|A|431
5MGP|1|a|A|432
5MGP|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4