IL_5MGP_130

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

5MGP|1|a|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MGP_130 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1078

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5MGP|1|a|G|446
5MGP|1|a|G|447
5MGP|1|a|A|448
5MGP|1|a|G|449
5MGP|1|a|G|450
*
5MGP|1|a|C|483
5MGP|1|a|G|484
5MGP|1|a|U|485
5MGP|1|a|U|486
5MGP|1|a|A|487
5MGP|1|a|C|488

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16