IL_5MGP_131
3D structure
- PDB id
- 5MGP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAGGGA*UCAUUGAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MGP_131 not in the Motif Atlas
- Homologous match to IL_6CZR_131
- Geometric discrepancy: 0.5091
- The information below is about IL_6CZR_131
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30149.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5MGP|1|a|G|450
5MGP|1|a|A|451
5MGP|1|a|A|452
5MGP|1|a|G|453
5MGP|1|a|G|454
5MGP|1|a|G|455
5MGP|1|a|A|456
*
5MGP|1|a|U|476
5MGP|1|a|C|477
5MGP|1|a|A|478
5MGP|1|a|U|479
5MGP|1|a|U|480
5MGP|1|a|G|481
5MGP|1|a|A|482
5MGP|1|a|C|483
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain p
- 30S ribosomal protein S16
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