IL_5MGP_152

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*UGUGCCUUCGGGAACC

Length

21 nucleotides

Bulged bases

5MGP|1|a|C|1031, 5MGP|1|a|G|1032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MGP|1|a|G|1002
5MGP|1|a|G|1003
5MGP|1|a|A|1004
5MGP|1|a|A|1005
5MGP|1|a|G|1006
*
5MGP|1|a|U|1023
5MGP|1|a|G|1024
5MGP|1|a|U|1025
5MGP|1|a|G|1026
5MGP|1|a|C|1027
5MGP|1|a|C|1028
5MGP|1|a|U|1029
5MGP|1|a|U|1030
5MGP|1|a|C|1031
5MGP|1|a|G|1032
5MGP|1|a|G|1033
5MGP|1|a|G|1034
5MGP|1|a|A|1035
5MGP|1|a|A|1036
5MGP|1|a|C|1037
5MGP|1|a|C|1038

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14