IL_5MGP_168
3D structure
- PDB id
- 5MGP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- 5MGP|1|a|A|1493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MGP_168 not in the Motif Atlas
- Geometric match to IL_5VCI_005
- Geometric discrepancy: 0.3189
- The information below is about IL_5VCI_005
- Detailed Annotation
- Not an internal loop
- Broad Annotation
- Not an internal loop
- Motif group
- IL_64417.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 18
Unit IDs
5MGP|1|a|C|1407
5MGP|1|a|A|1408
5MGP|1|a|C|1409
*
5MGP|1|a|G|1491
5MGP|1|a|A|1492
5MGP|1|a|A|1493
5MGP|1|a|G|1494
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 30S ribosomal protein S12
- Chain v
- mRNA
- Chain w
- Alternative ribosome-rescue factor A
- Chain z
- Peptide chain release factor 2
Coloring options: