IL_5MGP_191

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUACCACCCUUUAAUG

Length

68 nucleotides

Bulged bases

5MGP|1|A|U|2111, 5MGP|1|A|G|2112, 5MGP|1|A|U|2118, 5MGP|1|A|A|2126, 5MGP|1|A|U|2132, 5MGP|1|A|G|2162, 5MGP|1|A|A|2163, 5MGP|1|A|C|2164, 5MGP|1|A|A|2171, 5MGP|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MGP|1|A|C|2103
5MGP|1|A|C|2104
5MGP|1|A|U|2105
5MGP|1|A|U|2106
5MGP|1|A|G|2107
5MGP|1|A|A|2108
5MGP|1|A|U|2109
5MGP|1|A|G|2110
5MGP|1|A|U|2111
5MGP|1|A|G|2112
5MGP|1|A|U|2113
5MGP|1|A|A|2114
5MGP|1|A|G|2115
5MGP|1|A|G|2116
5MGP|1|A|A|2117
5MGP|1|A|U|2118
5MGP|1|A|A|2119
5MGP|1|A|G|2120
5MGP|1|A|G|2121
5MGP|1|A|U|2122
5MGP|1|A|G|2123
5MGP|1|A|G|2124
5MGP|1|A|G|2125
5MGP|1|A|A|2126
5MGP|1|A|G|2127
5MGP|1|A|G|2128
5MGP|1|A|C|2129
5MGP|1|A|U|2130
5MGP|1|A|U|2131
5MGP|1|A|U|2132
5MGP|1|A|G|2133
5MGP|1|A|A|2134
5MGP|1|A|A|2135
5MGP|1|A|G|2136
5MGP|1|A|U|2137
*
5MGP|1|A|A|2154
5MGP|1|A|U|2155
5MGP|1|A|G|2156
5MGP|1|A|G|2157
5MGP|1|A|A|2158
5MGP|1|A|G|2159
5MGP|1|A|C|2160
5MGP|1|A|C|2161
5MGP|1|A|G|2162
5MGP|1|A|A|2163
5MGP|1|A|C|2164
5MGP|1|A|C|2165
5MGP|1|A|U|2166
5MGP|1|A|U|2167
5MGP|1|A|G|2168
5MGP|1|A|A|2169
5MGP|1|A|A|2170
5MGP|1|A|A|2171
5MGP|1|A|U|2172
5MGP|1|A|A|2173
5MGP|1|A|C|2174
5MGP|1|A|C|2175
5MGP|1|A|A|2176
5MGP|1|A|C|2177
5MGP|1|A|C|2178
5MGP|1|A|C|2179
5MGP|1|A|U|2180
5MGP|1|A|U|2181
5MGP|1|A|U|2182
5MGP|1|A|A|2183
5MGP|1|A|A|2184
5MGP|1|A|U|2185
5MGP|1|A|G|2186

Current chains

Chain A

23S ribosomal RNA

Nearby chains