IL_5ML7_005

3D structure

PDB id

5ML7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF L1-STALK FRAGMENT OF 23S rRNA FROM HALOARCULA MARISMORTUI

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAC*GCCA

Length

7 nucleotides

Bulged bases

5ML7|1|A|C|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ML7_005 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.1939

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5ML7|1|A|U|2181
5ML7|1|A|A|2182
5ML7|1|A|C|2183
*
5ML7|1|A|G|2196
5ML7|1|A|C|2197
5ML7|1|A|C|2198
5ML7|1|A|A|2199

Current chains

Chain A

23S ribosomal RNA

Nearby chains