IL_5MLC_013
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 5MLC|1|A|U|515, 5MLC|1|A|A|519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MLC_013 not in the Motif Atlas
- Homologous match to IL_5J7L_255
- Geometric discrepancy: 0.098
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
5MLC|1|A|G|493
5MLC|1|A|A|494
5MLC|1|A|A|495
5MLC|1|A|C|496
*
5MLC|1|A|G|507
5MLC|1|A|A|508
5MLC|1|A|G|509
5MLC|1|A|U|510
5MLC|1|A|G|511
5MLC|1|A|A|512
5MLC|1|A|A|513
5MLC|1|A|A|514
5MLC|1|A|U|515
5MLC|1|A|A|516
5MLC|1|A|G|517
5MLC|1|A|A|518
5MLC|1|A|A|519
5MLC|1|A|C|520
Current chains
- Chain A
- 23S ribosomal RNA, chloroplastic
Nearby chains
- Chain U
- 50S ribosomal protein L22, chloroplastic
- Chain W
- 50S ribosomal protein L24, chloroplastic
Coloring options: