IL_5MLC_017

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MLC_017 not in the Motif Atlas

Geometric match to IL_7RQB_017

Geometric discrepancy: 0.1053

The information below is about IL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

5MLC|1|A|C|683
5MLC|1|A|C|684
5MLC|1|A|G|685
*
5MLC|1|A|C|817
5MLC|1|A|U|818
5MLC|1|A|G|819

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain F

50S ribosomal protein L4, chloroplastic

Chain N

50S ribosomal protein L15, chloroplastic