IL_5MLC_029

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MLC_029 not in the Motif Atlas

Geometric match to IL_1SAQ_002

Geometric discrepancy: 0.1913

The information below is about IL_1SAQ_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5MLC|1|A|U|886
5MLC|1|A|G|887
5MLC|1|A|C|888
5MLC|1|A|G|889
*
5MLC|1|A|C|907
5MLC|1|A|A|908
5MLC|1|A|A|909
5MLC|1|A|A|910

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains