IL_5MLC_030

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGC*GUACC

Length

9 nucleotides

Bulged bases

5MLC|1|A|A|905

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MLC_030 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3497

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5MLC|1|A|G|889
5MLC|1|A|G|890
5MLC|1|A|G|891
5MLC|1|A|C|892
*
5MLC|1|A|G|903
5MLC|1|A|U|904
5MLC|1|A|A|905
5MLC|1|A|C|906
5MLC|1|A|C|907

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains