IL_5MLC_035

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUCAGUG*CUAAG

Length

12 nucleotides

Bulged bases

5MLC|1|A|A|1170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MLC_035 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1884

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

5MLC|1|A|C|1046
5MLC|1|A|U|1047
5MLC|1|A|C|1048
5MLC|1|A|A|1049
5MLC|1|A|G|1050
5MLC|1|A|U|1051
5MLC|1|A|G|1052
*
5MLC|1|A|C|1167
5MLC|1|A|U|1168
5MLC|1|A|A|1169
5MLC|1|A|A|1170
5MLC|1|A|G|1171

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 6

50S ribosomal protein L36, chloroplastic

Chain H

50S ribosomal protein L6, chloroplastic

Chain L

50S ribosomal protein L13, chloroplastic