IL_5MLC_040

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGGUUUGCCUAGAAGCAGCCACCCUUGAAAG*CAC

Length

36 nucleotides

Bulged bases

5MLC|1|A|U|1089, 5MLC|1|A|C|1093, 5MLC|1|A|U|1094, 5MLC|1|A|A|1098

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MLC|1|A|G|1083
5MLC|1|A|G|1084
5MLC|1|A|A|1085
5MLC|1|A|G|1086
5MLC|1|A|G|1087
5MLC|1|A|U|1088
5MLC|1|A|U|1089
5MLC|1|A|U|1090
5MLC|1|A|G|1091
5MLC|1|A|C|1092
5MLC|1|A|C|1093
5MLC|1|A|U|1094
5MLC|1|A|A|1095
5MLC|1|A|G|1096
5MLC|1|A|A|1097
5MLC|1|A|A|1098
5MLC|1|A|G|1099
5MLC|1|A|C|1100
5MLC|1|A|A|1101
5MLC|1|A|G|1102
5MLC|1|A|C|1103
5MLC|1|A|C|1104
5MLC|1|A|A|1105
5MLC|1|A|C|1106
5MLC|1|A|C|1107
5MLC|1|A|C|1108
5MLC|1|A|U|1109
5MLC|1|A|U|1110
5MLC|1|A|G|1111
5MLC|1|A|A|1112
5MLC|1|A|A|1113
5MLC|1|A|A|1114
5MLC|1|A|G|1115
*
5MLC|1|A|C|1130
5MLC|1|A|A|1131
5MLC|1|A|C|1132

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 6

50S ribosomal protein L36, chloroplastic

Chain O

50S ribosomal protein L16, chloroplastic