IL_5MLC_041

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5MLC|1|A|A|1116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MLC_041 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2772

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

5MLC|1|A|G|1115
5MLC|1|A|A|1116
5MLC|1|A|G|1117
5MLC|1|A|U|1118
5MLC|1|A|G|1119
*
5MLC|1|A|C|1128
5MLC|1|A|U|1129
5MLC|1|A|C|1130

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 6

50S ribosomal protein L36, chloroplastic

Chain O

50S ribosomal protein L16, chloroplastic