IL_5MLC_042

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGU*AGCG

Length

7 nucleotides

Bulged bases

5MLC|1|A|G|1269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MLC_042 not in the Motif Atlas

Homologous match to IL_7A0S_041

Geometric discrepancy: 0.1135

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

5MLC|1|A|C|1217
5MLC|1|A|G|1218
5MLC|1|A|U|1219
*
5MLC|1|A|A|1268
5MLC|1|A|G|1269
5MLC|1|A|C|1270
5MLC|1|A|G|1271

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain F

50S ribosomal protein L4, chloroplastic

Chain N

50S ribosomal protein L15, chloroplastic

Chain S

50S ribosomal protein L20, chloroplastic