IL_5MLC_072

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAC*GGGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MLC_072 not in the Motif Atlas

Homologous match to IL_4WF9_075

Geometric discrepancy: 0.1793

The information below is about IL_4WF9_075

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

5MLC|1|A|U|1874
5MLC|1|A|G|1875
5MLC|1|A|A|1876
5MLC|1|A|C|1877
*
5MLC|1|A|G|1888
5MLC|1|A|G|1889
5MLC|1|A|G|1890
5MLC|1|A|A|1891
5MLC|1|A|G|1892

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain N

50S ribosomal protein L15, chloroplastic