IL_5MLC_073

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MLC_073 not in the Motif Atlas

Geometric match to IL_7RQB_076

Geometric discrepancy: 0.1146

The information below is about IL_7RQB_076

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_59677.2

Basepair signature

cWW-cWW

Number of instances in this motif group

19

Unit IDs

5MLC|1|A|G|1947
5MLC|1|A|C|1948
*
5MLC|1|A|G|1978
5MLC|1|A|C|1979
5MLC|1|A|A|1980
5MLC|1|A|C|1981

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 9

Ribosome-recycling factor, chloroplastic