IL_5MLC_102
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGUAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 5MLC|1|A|U|2706
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MLC_102 not in the Motif Atlas
- Geometric match to IL_4V9F_094
- Geometric discrepancy: 0.1693
- The information below is about IL_4V9F_094
- Detailed Annotation
- UAA/GAN variation
- Broad Annotation
- UAA/GAN variation
- Motif group
- IL_45790.2
- Basepair signature
- cWW-tSH-L-tHS-cWW
- Number of instances in this motif group
- 12
Unit IDs
5MLC|1|A|U|2704
5MLC|1|A|G|2705
5MLC|1|A|U|2706
5MLC|1|A|A|2707
5MLC|1|A|C|2708
*
5MLC|1|A|G|2736
5MLC|1|A|G|2737
5MLC|1|A|U|2738
5MLC|1|A|A|2739
5MLC|1|A|G|2740
Current chains
- Chain A
- 23S ribosomal RNA, chloroplastic
Nearby chains
- Chain C
- 4.8S ribosomal RNA, chloroplastic
- Chain E
- 50S ribosomal protein L3, chloroplastic
- Chain P
- 50S ribosomal protein L17, chloroplastic
- Chain R
- 50S ribosomal protein L19, chloroplastic
Coloring options: