IL_5MLC_104

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

5MLC|1|A|C|2753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MLC_104 not in the Motif Atlas

Geometric match to IL_1S03_006

Geometric discrepancy: 0.2226

The information below is about IL_1S03_006

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

5MLC|1|A|G|2752
5MLC|1|A|C|2753
5MLC|1|A|G|2754
*
5MLC|1|A|C|2786
5MLC|1|A|C|2787

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain E

50S ribosomal protein L3, chloroplastic

Chain H

50S ribosomal protein L6, chloroplastic

Chain L

50S ribosomal protein L13, chloroplastic