IL_5MQF_004
3D structure
- PDB id
- 5MQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.9 Å
Loop
- Sequence
- AGAUCGCAUA*UCCGU
- Length
- 15 nucleotides
- Bulged bases
- 5MQF|1|5|G|20, 5MQF|1|5|A|21, 5MQF|1|5|U|22, 5MQF|1|5|C|23, 5MQF|1|5|G|24, 5MQF|1|5|C|25, 5MQF|1|5|A|26
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MQF|1|5|A|19
5MQF|1|5|G|20
5MQF|1|5|A|21
5MQF|1|5|U|22
5MQF|1|5|C|23
5MQF|1|5|G|24
5MQF|1|5|C|25
5MQF|1|5|A|26
5MQF|1|5|U|27
5MQF|1|5|A|28
*
5MQF|1|5|U|54
5MQF|1|5|C|55
5MQF|1|5|C|56
5MQF|1|5|G|57
5MQF|1|5|U|58
Current chains
- Chain 5
- Homo sapiens U5 A small nuclear RNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain B
- 116 kDa U5 small nuclear ribonucleoprotein component
- Chain C
- SNW domain-containing protein 1
- Chain R
- Spliceosome-associated protein CWC15 homolog
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