IL_5MQF_009
3D structure
- PDB id
- 5MQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.9 Å
Loop
- Sequence
- CC*GAUG
- Length
- 6 nucleotides
- Bulged bases
- 5MQF|1|6|A|73, 5MQF|1|6|U|74
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MQF_009 not in the Motif Atlas
- Geometric match to IL_4WF9_096
- Geometric discrepancy: 0.1253
- The information below is about IL_4WF9_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.3
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 26
Unit IDs
5MQF|1|6|C|61
5MQF|1|6|C|62
*
5MQF|1|6|G|72
5MQF|1|6|A|73
5MQF|1|6|U|74
5MQF|1|6|G|75
Current chains
- Chain 6
- Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA
Nearby chains
- Chain 2
- U2 splicesomal small nuclear RNA; U2 snRNA
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain C
- SNW domain-containing protein 1
- Chain L
- Cell division cycle 5-like protein
- Chain P
- Pre-mRNA-splicing factor RBM22
- Chain Y
- MINX pre-mRNA (intron)
- Chain Z
- MINX pre-mRNA (intron)
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