IL_5MRC_009

3D structure

PDB id

5MRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

UGAGUAU*AGAAAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRC_009 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.1291

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5MRC|1|A|U|279
5MRC|1|A|G|280
5MRC|1|A|A|281
5MRC|1|A|G|282
5MRC|1|A|U|283
5MRC|1|A|A|284
5MRC|1|A|U|285
*
5MRC|1|A|A|293
5MRC|1|A|G|294
5MRC|1|A|A|295
5MRC|1|A|A|296
5MRC|1|A|A|297
5MRC|1|A|A|298

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain J

uL15m

Chain Z

bL35m